IL_6V3A_111

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGGAAG*UGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_111 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.2027

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6V3A|1|AN1|U|2843
6V3A|1|AN1|G|2844
6V3A|1|AN1|G|2845
6V3A|1|AN1|A|2846
6V3A|1|AN1|A|2847
6V3A|1|AN1|G|2848
*
6V3A|1|AN1|U|2861
6V3A|1|AN1|G|2862
6V3A|1|AN1|A|2863
6V3A|1|AN1|A|2864
6V3A|1|AN1|G|2865

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19