IL_6V3A_117

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

6V3A|1|sN1|A|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_117 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.1159

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6V3A|1|sN1|A|46
6V3A|1|sN1|G|47
*
6V3A|1|sN1|C|392
6V3A|1|sN1|A|393
6V3A|1|sN1|U|394

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16