IL_6V3A_128

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_128 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.2547

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6V3A|1|sN1|U|245
6V3A|1|sN1|A|246
6V3A|1|sN1|G|247
6V3A|1|sN1|U|248
*
6V3A|1|sN1|A|270
6V3A|1|sN1|G|271

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17