IL_6V3A_135
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 6V3A|1|sN1|U|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3A_135 not in the Motif Atlas
- Geometric match to IL_5J7L_022
- Geometric discrepancy: 0.1544
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6V3A|1|sN1|G|442
6V3A|1|sN1|G|443
6V3A|1|sN1|A|444
6V3A|1|sN1|G|445
6V3A|1|sN1|G|446
*
6V3A|1|sN1|C|480
6V3A|1|sN1|G|481
6V3A|1|sN1|U|482
6V3A|1|sN1|U|483
6V3A|1|sN1|A|484
6V3A|1|sN1|C|485
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain p
- 30S ribosomal protein S16
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