3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
6V3A|1|sN1|U|482
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_135 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.1544
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6V3A|1|sN1|G|442
6V3A|1|sN1|G|443
6V3A|1|sN1|A|444
6V3A|1|sN1|G|445
6V3A|1|sN1|G|446
*
6V3A|1|sN1|C|480
6V3A|1|sN1|G|481
6V3A|1|sN1|U|482
6V3A|1|sN1|U|483
6V3A|1|sN1|A|484
6V3A|1|sN1|C|485

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain p
30S ribosomal protein S16

Coloring options:


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