3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_190 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.0903
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

6V3A|1|AN1|G|1664
6V3A|1|AN1|G|1665
6V3A|1|AN1|A|1666
6V3A|1|AN1|A|1667
6V3A|1|AN1|C|1668
6V3A|1|AN1|U|1669
6V3A|1|AN1|A|1670
6V3A|1|AN1|G|1671
6V3A|1|AN1|G|1672
*
6V3A|1|AN1|C|1986
6V3A|1|AN1|U|1987
6V3A|1|AN1|G|1988
6V3A|1|AN1|U|1989
6V3A|1|AN1|C|1990

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L14

Coloring options:


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