3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GU(7MG)*CU
Length
5 nucleotides
Bulged bases
6V3A|1|AN1|U|2064
QA status
Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_194 not in the Motif Atlas
Homologous match to IL_4WF9_080
Geometric discrepancy: 0.0915
The information below is about IL_4WF9_080
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6V3A|1|AN1|G|2063
6V3A|1|AN1|U|2064
6V3A|1|AN1|7MG|2065
*
6V3A|1|AN1|C|2438
6V3A|1|AN1|U|2439

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain K
50S ribosomal protein L15

Coloring options:


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