IL_6V3B_076

3D structure

PDB id

6V3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CCC*G(2MG)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3B_076 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1424

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6V3B|1|AN1|C|2060
6V3B|1|AN1|C|2061
6V3B|1|AN1|C|2062
*
6V3B|1|AN1|G|2440
6V3B|1|AN1|2MG|2441
6V3B|1|AN1|G|2442

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15