IL_6VFF_001

3D structure

PDB id

6VFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

U(8AZ)G*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VFF|1|C|U|12
6VFF|1|C|8AZ|13
6VFF|1|C|G|14
*
6VFF|1|D|C|19
6VFF|1|D|C|20
6VFF|1|D|A|21

Current chains

Chain C

RNA (5-R(*GP*CP*UP*CP*GP*CP*GP*AP*UP*GP*CP*UP*(8AZ)P*GP*AP*GP*GP*GP*CP* UP*CP*UP*GP*AP*UP*AP*GP*CP*UP*AP*CP*G)-3)

Chain D

RNA(5-R(*CP*GP*UP*AP*GP*CP*UP*AP*UP*CP*AP*GP*AP*GP*CP*CP*CP*CP*CP*CP*AP*GP*CP*AP*UP*CP*GP*CP*GP*AP*GP*C)-3)

Nearby chains

Chain A

Double-stranded RNA-specific editase 1

Chain B

Double-stranded RNA-specific editase 1