IL_6VLZ_048

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

6VLZ|1|A|G|3063, 6VLZ|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VLZ_048 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.2431

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

6VLZ|1|A|A|2997
6VLZ|1|A|U|2998
6VLZ|1|A|C|2999
*
6VLZ|1|A|G|3061
6VLZ|1|A|U|3062
6VLZ|1|A|G|3063
6VLZ|1|A|A|3064
6VLZ|1|A|U|3065

Current chains

Chain A

16s rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial