IL_6VMI_046

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

6VMI|1|A|G|3068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_046 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3564

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

6VMI|1|A|U|2994
6VMI|1|A|G|2995
6VMI|1|A|G|2996
*
6VMI|1|A|C|3066
6VMI|1|A|U|3067
6VMI|1|A|G|3068
6VMI|1|A|A|3069

Current chains

Chain A

16s rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial