IL_6VMI_086
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AUAUAC*GUGU
- Length
- 10 nucleotides
- Bulged bases
- 6VMI|1|AA|U|1259
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VMI_086 not in the Motif Atlas
- Geometric match to IL_5TBW_041
- Geometric discrepancy: 0.387
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6VMI|1|AA|A|1256
6VMI|1|AA|U|1257
6VMI|1|AA|A|1258
6VMI|1|AA|U|1259
6VMI|1|AA|A|1260
6VMI|1|AA|C|1261
*
6VMI|1|AA|G|1334
6VMI|1|AA|U|1335
6VMI|1|AA|G|1336
6VMI|1|AA|U|1337
Current chains
- Chain AA
- 12s rRNA
Nearby chains
- Chain AC
- 28S ribosomal protein S24, mitochondrial
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AH
- 28S ribosomal protein S10, mitochondrial
- Chain AK
- 28S ribosomal protein S14, mitochondrial
- Chain AZ
- 28S ribosomal protein S33, mitochondrial
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