IL_6VMI_091
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CC*GCUACAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6VMI|1|AA|C|1293, 6VMI|1|AA|A|1296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VMI_091 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.2608
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6VMI|1|AA|C|1278
6VMI|1|AA|C|1279
*
6VMI|1|AA|G|1289
6VMI|1|AA|C|1290
6VMI|1|AA|U|1291
6VMI|1|AA|A|1292
6VMI|1|AA|C|1293
6VMI|1|AA|A|1294
6VMI|1|AA|A|1295
6VMI|1|AA|A|1296
6VMI|1|AA|G|1297
Current chains
- Chain AA
- 12s rRNA
Nearby chains
- Chain A2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain AB
- 28S ribosomal protein S2, mitochondrial
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AE
- 28S ribosomal protein S6, mitochondrial
- Chain AG
- 28S ribosomal protein S9, mitochondrial
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain AS
- 28S ribosomal protein S23, mitochondrial
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