IL_6VMI_096

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_096 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.2532

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6VMI|1|AA|G|1489
6VMI|1|AA|U|1490
6VMI|1|AA|C|1491
*
6VMI|1|AA|G|1559
6VMI|1|AA|U|1560
6VMI|1|AA|C|1561

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Aurora kinase A-interacting protein

Chain A6

P-site and E-site tRNA

Chain v

Elongation factor G, mitochondrial