IL_6VU3_045

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VU3|1|D|U|1025, 6VU3|1|D|U|1030, 6VU3|1|D|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VU3|1|D|G|1003
6VU3|1|D|A|1004
6VU3|1|D|A|1005
6VU3|1|D|G|1006
*
6VU3|1|D|U|1023
6VU3|1|D|G|1024
6VU3|1|D|U|1025
6VU3|1|D|G|1026
6VU3|1|D|C|1027
6VU3|1|D|C|1028
6VU3|1|D|U|1029
6VU3|1|D|U|1030
6VU3|1|D|C|1031
6VU3|1|D|G|1032
6VU3|1|D|G|1033
6VU3|1|D|G|1034
6VU3|1|D|A|1035
6VU3|1|D|A|1036
6VU3|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AA

DNA-directed RNA polymerase subunit beta

Chain S

30S ribosomal protein S14