3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GC*GAC
Length
5 nucleotides
Bulged bases
6VU3|1|a|A|764
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VU3_083 not in the Motif Atlas
Geometric match to IL_5J7L_261
Geometric discrepancy: 0.0511
The information below is about IL_5J7L_261
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

6VU3|1|a|G|697
6VU3|1|a|C|698
*
6VU3|1|a|G|763
6VU3|1|a|A|764
6VU3|1|a|C|765

Current chains

Chain a
23S rRNA

Nearby chains

Chain h
50S ribosomal protein L2

Coloring options:


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