IL_6VU3_113
3D structure
- PDB id
- 6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VU3_113 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0565
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6VU3|1|a|A|1262
6VU3|1|a|U|1263
6VU3|1|a|A|1264
6VU3|1|a|A|1265
6VU3|1|a|G|1266
6VU3|1|a|U|1267
6VU3|1|a|A|1268
6VU3|1|a|A|1269
*
6VU3|1|a|U|2011
6VU3|1|a|G|2012
6VU3|1|a|A|2013
6VU3|1|a|A|2014
6VU3|1|a|A|2015
6VU3|1|a|U|2016
6VU3|1|a|U|2017
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain l
- 50S ribosomal protein L4
Coloring options: