3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
ACG*CUAU
Length
7 nucleotides
Bulged bases
6VU3|1|a|C|2055, 6VU3|1|a|U|2613
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VU3_147 not in the Motif Atlas
Homologous match to IL_5J7L_321
Geometric discrepancy: 0.105
The information below is about IL_5J7L_321
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83389.2
Basepair signature
cWW-cWW
Number of instances in this motif group
5

Unit IDs

6VU3|1|a|A|2054
6VU3|1|a|C|2055
6VU3|1|a|G|2056
*
6VU3|1|a|C|2612
6VU3|1|a|U|2613
6VU3|1|a|A|2614
6VU3|1|a|U|2615

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain i
50S ribosomal protein L32
Chain j
50S ribosomal protein L3

Coloring options:


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