IL_6VU3_160

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6VU3|1|a|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VU3_160 not in the Motif Atlas

Geometric match to IL_9AXU_122

Geometric discrepancy: 0.3425

The information below is about IL_9AXU_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6VU3|1|a|U|2401
6VU3|1|a|U|2402
6VU3|1|a|C|2403
*
6VU3|1|a|G|2414
6VU3|1|a|G|2415

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L33

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15