IL_6VU3_191

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6VU3|1|D|A|1257, 6VU3|1|D|A|1280, 6VU3|1|D|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VU3|1|D|G|1255
6VU3|1|D|A|1256
6VU3|1|D|A|1257
6VU3|1|D|G|1258
6VU3|1|D|C|1259
6VU3|1|D|G|1260
6VU3|1|D|A|1261
6VU3|1|D|C|1262
6VU3|1|D|C|1263
*
6VU3|1|D|G|1272
6VU3|1|D|C|1273
6VU3|1|D|A|1274
6VU3|1|D|A|1275
6VU3|1|D|G|1276
6VU3|1|D|C|1277
6VU3|1|D|G|1278
6VU3|1|D|G|1279
6VU3|1|D|A|1280
6VU3|1|D|C|1281
6VU3|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19