IL_6VU3_192

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6VU3|1|a|U|846, 6VU3|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VU3_192 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1165

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6VU3|1|a|A|844
6VU3|1|a|A|845
6VU3|1|a|U|846
6VU3|1|a|U|847
6VU3|1|a|C|848
*
6VU3|1|a|G|930
6VU3|1|a|U|931
6VU3|1|a|U|932
6VU3|1|a|A|933
6VU3|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L30