IL_6VWL_003

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

6VWL|1|1|C|48, 6VWL|1|1|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_003 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.1427

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6VWL|1|1|C|47
6VWL|1|1|C|48
6VWL|1|1|U|49
6VWL|1|1|A|50
6VWL|1|1|A|51
6VWL|1|1|C|52
*
6VWL|1|1|G|359
6VWL|1|1|G|360
6VWL|1|1|G|361

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S12