IL_6VWL_012
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6VWL|1|1|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_012 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.5628
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VWL|1|1|G|147
6VWL|1|1|G|148
6VWL|1|1|A|149
6VWL|1|1|U|150
6VWL|1|1|A|151
6VWL|1|1|A|152
6VWL|1|1|C|153
*
6VWL|1|1|G|168
6VWL|1|1|C|169
6VWL|1|1|U|170
6VWL|1|1|A|171
6VWL|1|1|A|172
6VWL|1|1|U|173
6VWL|1|1|A|174
6VWL|1|1|C|175
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain s
- 30S ribosomal protein S20
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