IL_6VWL_041

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6VWL|1|1|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_041 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1066

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6VWL|1|1|G|925
6VWL|1|1|G|926
6VWL|1|1|G|927
*
6VWL|1|1|U|1390
6VWL|1|1|U|1391

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 4

HIV ribosomal frameshift signal