IL_6VWL_047
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6VWL|1|1|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_047 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1966
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6VWL|1|1|U|1052
6VWL|1|1|G|1053
6VWL|1|1|C|1054
6VWL|1|1|A|1055
6VWL|1|1|U|1056
*
6VWL|1|1|A|1204
6VWL|1|1|U|1205
6VWL|1|1|G|1206
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 4
- HIV ribosomal frameshift signal
- Chain b
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S14
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