IL_6VWL_054

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

6VWL|1|1|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|1|G|1255
6VWL|1|1|A|1256
6VWL|1|1|A|1257
6VWL|1|1|G|1258
*
6VWL|1|1|C|1277
6VWL|1|1|G|1278
6VWL|1|1|G|1279
6VWL|1|1|A|1280
6VWL|1|1|C|1281
6VWL|1|1|C|1282

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S3

Chain h

30S ribosomal protein S9

Chain i

30S ribosomal protein S10

Chain m

30S ribosomal protein S14