IL_6VWL_065

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_065 not in the Motif Atlas

Homologous match to IL_5J7L_065

Geometric discrepancy: 0.1601

The information below is about IL_5J7L_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

6VWL|1|1|U|1445
6VWL|1|1|A|1446
6VWL|1|1|A|1447
6VWL|1|1|C|1448
*
6VWL|1|1|G|1455
6VWL|1|1|A|1456
6VWL|1|1|G|1457

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S20