IL_6VWL_076

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6VWL|1|2|A|504, 6VWL|1|2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_076 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.074

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6VWL|1|2|G|481
6VWL|1|2|A|482
6VWL|1|2|A|483
6VWL|1|2|C|484
*
6VWL|1|2|G|496
6VWL|1|2|A|497
6VWL|1|2|G|498
6VWL|1|2|U|499
6VWL|1|2|G|500
6VWL|1|2|A|501
6VWL|1|2|A|502
6VWL|1|2|A|503
6VWL|1|2|A|504
6VWL|1|2|A|505
6VWL|1|2|G|506
6VWL|1|2|A|507
6VWL|1|2|A|508
6VWL|1|2|C|509

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L22

Chain S

50S ribosomal protein L24