IL_6VWL_077

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_077 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1236

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6VWL|1|2|G|536
6VWL|1|2|G|537
6VWL|1|2|A|538
6VWL|1|2|G|539
*
6VWL|1|2|U|554
6VWL|1|2|G|555
6VWL|1|2|A|556
6VWL|1|2|C|557

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain O

50S ribosomal protein L20