3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GA*UGC
Length
5 nucleotides
Bulged bases
6VWL|1|2|G|914
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWL_091 not in the Motif Atlas
Homologous match to IL_5J7L_271
Geometric discrepancy: 0.0882
The information below is about IL_5J7L_271
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

6VWL|1|2|G|862
6VWL|1|2|A|863
*
6VWL|1|2|U|913
6VWL|1|2|G|914
6VWL|1|2|C|915

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain K
50S ribosomal protein L16
Chain U
50S ribosomal protein L27

Coloring options:


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