IL_6VWL_107

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_107 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0782

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6VWL|1|2|A|1262
6VWL|1|2|U|1263
6VWL|1|2|A|1264
6VWL|1|2|A|1265
6VWL|1|2|G|1266
6VWL|1|2|U|1267
6VWL|1|2|A|1268
6VWL|1|2|A|1269
*
6VWL|1|2|U|2011
6VWL|1|2|G|2012
6VWL|1|2|A|2013
6VWL|1|2|A|2014
6VWL|1|2|A|2015
6VWL|1|2|U|2016
6VWL|1|2|U|2017

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32