IL_6VWL_125
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6VWL|1|2|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_125 not in the Motif Atlas
- Homologous match to IL_4WF9_065
- Geometric discrepancy: 0.133
- The information below is about IL_4WF9_065
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6VWL|1|2|A|1669
6VWL|1|2|C|1670
6VWL|1|2|U|1671
6VWL|1|2|A|1672
6VWL|1|2|G|1673
6VWL|1|2|G|1674
*
6VWL|1|2|C|1990
6VWL|1|2|U|1991
6VWL|1|2|G|1992
6VWL|1|2|U|1993
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L14
Coloring options: