IL_6VWL_131

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6VWL|1|2|A|1801, 6VWL|1|2|C|1816, 6VWL|1|2|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_131 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0999

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6VWL|1|2|U|1798
6VWL|1|2|G|1799
6VWL|1|2|C|1800
6VWL|1|2|A|1801
6VWL|1|2|A|1802
6VWL|1|2|A|1803
6VWL|1|2|C|1804
*
6VWL|1|2|G|1813
6VWL|1|2|G|1814
6VWL|1|2|A|1815
6VWL|1|2|C|1816
6VWL|1|2|G|1817
6VWL|1|2|U|1818
6VWL|1|2|A|1819
6VWL|1|2|U|1820
6VWL|1|2|A|1821

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2