IL_6VWL_137
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6VWL|1|2|A|1938, 6VWL|1|2|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_137 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1765
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6VWL|1|2|C|1934
6VWL|1|2|G|1935
6VWL|1|2|A|1936
6VWL|1|2|A|1937
6VWL|1|2|A|1938
6VWL|1|2|U|1939
6VWL|1|2|U|1940
6VWL|1|2|C|1941
6VWL|1|2|C|1942
6VWL|1|2|U|1943
6VWL|1|2|U|1944
6VWL|1|2|G|1945
*
6VWL|1|2|C|1961
6VWL|1|2|C|1962
6VWL|1|2|U|1963
6VWL|1|2|G|1964
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 50S ribosomal protein L2
Coloring options: