IL_6VWL_145
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUG*CUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_145 not in the Motif Atlas
- Geometric match to IL_5J7L_050
- Geometric discrepancy: 0.3088
- The information below is about IL_5J7L_050
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
6VWL|1|2|A|2108
6VWL|1|2|U|2109
6VWL|1|2|G|2110
*
6VWL|1|2|C|2179
6VWL|1|2|U|2180
6VWL|1|2|U|2181
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
Coloring options: