IL_6VWL_146

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6VWL|1|2|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|G|2110
6VWL|1|2|U|2111
6VWL|1|2|G|2112
6VWL|1|2|U|2113
6VWL|1|2|A|2114
6VWL|1|2|G|2115
6VWL|1|2|G|2116
6VWL|1|2|A|2117
6VWL|1|2|U|2118
6VWL|1|2|A|2119
6VWL|1|2|G|2120
6VWL|1|2|G|2121
*
6VWL|1|2|C|2177
6VWL|1|2|C|2178
6VWL|1|2|C|2179

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA