IL_6VWL_148

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUGAAGU*AUGGAG

Length

15 nucleotides

Bulged bases

6VWL|1|2|U|2132, 6VWL|1|2|A|2134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|C|2129
6VWL|1|2|U|2130
6VWL|1|2|U|2131
6VWL|1|2|U|2132
6VWL|1|2|G|2133
6VWL|1|2|A|2134
6VWL|1|2|A|2135
6VWL|1|2|G|2136
6VWL|1|2|U|2137
*
6VWL|1|2|A|2154
6VWL|1|2|U|2155
6VWL|1|2|G|2156
6VWL|1|2|G|2157
6VWL|1|2|A|2158
6VWL|1|2|G|2159

Current chains

Chain 2

23S ribosomal RNA

Nearby chains