IL_6VWL_173

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_173 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VWL|1|2|U|2847
6VWL|1|2|G|2848
6VWL|1|2|U|2849
6VWL|1|2|A|2850
6VWL|1|2|A|2851
6VWL|1|2|G|2852
*
6VWL|1|2|U|2865
6VWL|1|2|U|2866
6VWL|1|2|G|2867
6VWL|1|2|A|2868
6VWL|1|2|G|2869

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19