IL_6VWM_005

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6VWM|1|1|G|64, 6VWM|1|1|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_005 not in the Motif Atlas

Homologous match to IL_6CZR_117

Geometric discrepancy: 0.1439

The information below is about IL_6CZR_117

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6VWM|1|1|C|63
6VWM|1|1|G|64
6VWM|1|1|A|65
6VWM|1|1|A|66
*
6VWM|1|1|U|103
6VWM|1|1|G|104

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S20