IL_6VWM_019

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

6VWM|1|1|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_019 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2737

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6VWM|1|1|U|375
6VWM|1|1|G|376
*
6VWM|1|1|U|387
6VWM|1|1|G|388
6VWM|1|1|A|389

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S16