IL_6VWM_022
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 6VWM|1|1|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_022 not in the Motif Atlas
- Geometric match to IL_5J7L_022
- Geometric discrepancy: 0.1891
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6VWM|1|1|G|446
6VWM|1|1|G|447
6VWM|1|1|A|448
6VWM|1|1|G|449
6VWM|1|1|G|450
*
6VWM|1|1|C|483
6VWM|1|1|G|484
6VWM|1|1|U|485
6VWM|1|1|U|486
6VWM|1|1|A|487
6VWM|1|1|C|488
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S4
- Chain o
- 30S ribosomal protein S16
Coloring options: