3D structure

PDB id
6VWM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWM_052 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.2428
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6VWM|1|1|C|1158
6VWM|1|1|U|1159
6VWM|1|1|G|1160
6VWM|1|1|C|1161
*
6VWM|1|1|G|1175
6VWM|1|1|A|1176
6VWM|1|1|G|1177
6VWM|1|1|G|1178
6VWM|1|1|A|1179
6VWM|1|1|A|1180
6VWM|1|1|G|1181

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain a
30S ribosomal protein S2
Chain h
30S ribosomal protein S9

Coloring options:


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