IL_6VWM_056

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_056 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1899

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VWM|1|1|C|1303
6VWM|1|1|G|1304
6VWM|1|1|G|1305
6VWM|1|1|A|1306
6VWM|1|1|U|1307
6VWM|1|1|U|1308
*
6VWM|1|1|A|1329
6VWM|1|1|U|1330
6VWM|1|1|G|1331
6VWM|1|1|A|1332
6VWM|1|1|A|1333
6VWM|1|1|G|1334

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S13