IL_6VWM_057

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6VWM|1|1|C|1400, 6VWM|1|1|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_057 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1222

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6VWM|1|1|C|1399
6VWM|1|1|C|1400
6VWM|1|1|G|1401
*
6VWM|1|1|C|1501
6VWM|1|1|A|1502
6VWM|1|1|A|1503
6VWM|1|1|G|1504

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 4

HIV ribosomal frameshift signal

Chain 5

Transfer RNA; tRNA