IL_6VWM_073

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|C|274
6VWM|1|2|C|275
6VWM|1|2|U|276
6VWM|1|2|G|277
6VWM|1|2|A|278
6VWM|1|2|A|279
6VWM|1|2|U|280
6VWM|1|2|C|281
*
6VWM|1|2|G|359
6VWM|1|2|U|360
6VWM|1|2|G|361
6VWM|1|2|A|362
6VWM|1|2|G|363

Current chains

Chain 2

23S ribosomal RNA

Nearby chains