IL_6VWM_098

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6VWM|1|2|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_098 not in the Motif Atlas

Geometric match to IL_4WF9_038

Geometric discrepancy: 0.1662

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6VWM|1|2|G|1011
6VWM|1|2|U|1012
6VWM|1|2|C|1013
*
6VWM|1|2|G|1149
6VWM|1|2|C|1150

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20