3D structure

PDB id
6VWM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWM_107 not in the Motif Atlas
Homologous match to IL_5J7L_290
Geometric discrepancy: 0.1436
The information below is about IL_5J7L_290
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

6VWM|1|2|G|1310
6VWM|1|2|G|1311
6VWM|1|2|U|1312
6VWM|1|2|U|1313
*
6VWM|1|2|A|1603
6VWM|1|2|C|1604

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain AA
50S ribosomal protein L34
Chain R
50S ribosomal protein L23

Coloring options:


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