IL_6VWM_108

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6VWM|1|2|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_108 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1992

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6VWM|1|2|C|1319
6VWM|1|2|C|1320
6VWM|1|2|A|1321
6VWM|1|2|A|1322
6VWM|1|2|C|1323
*
6VWM|1|2|G|1331
6VWM|1|2|G|1332
6VWM|1|2|G|1333

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L22