IL_6VWM_118

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_118 not in the Motif Atlas

Homologous match to IL_5J7L_301

Geometric discrepancy: 0.5055

The information below is about IL_5J7L_301

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6VWM|1|2|U|1481
6VWM|1|2|G|1482
*
6VWM|1|2|C|1507
6VWM|1|2|A|1508
6VWM|1|2|A|1509
6VWM|1|2|G|1510

Current chains

Chain 2

23S ribosomal RNA

Nearby chains