IL_6VWM_141

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6VWM|1|2|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_141 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1311

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6VWM|1|2|U|2081
6VWM|1|2|A|2082
6VWM|1|2|G|2083
*
6VWM|1|2|U|2236
6VWM|1|2|G|2237
6VWM|1|2|G|2238
6VWM|1|2|G|2239

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain V

50S ribosomal protein L28