IL_6VWM_144

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUGUGUAGGAUAGGU*ACCCUU

Length

21 nucleotides

Bulged bases

6VWM|1|2|U|2111, 6VWM|1|2|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|A|2108
6VWM|1|2|U|2109
6VWM|1|2|G|2110
6VWM|1|2|U|2111
6VWM|1|2|G|2112
6VWM|1|2|U|2113
6VWM|1|2|A|2114
6VWM|1|2|G|2115
6VWM|1|2|G|2116
6VWM|1|2|A|2117
6VWM|1|2|U|2118
6VWM|1|2|A|2119
6VWM|1|2|G|2120
6VWM|1|2|G|2121
6VWM|1|2|U|2122
*
6VWM|1|2|A|2176
6VWM|1|2|C|2177
6VWM|1|2|C|2178
6VWM|1|2|C|2179
6VWM|1|2|U|2180
6VWM|1|2|U|2181

Current chains

Chain 2

23S ribosomal RNA

Nearby chains